ClustalW / ClustalX Benchmarks

Processor	Name	System	time /s -O (default)	time /s -O3	time /s Other	SMP concurrent times /s
Alpha 21164A 466MHz 4MB	tau	digital unix 4.0 Alphaserver 4100 5/466 4cpu	59.1	58.9	-O5 -om -non_shared -speculate all 58.0 -O5 61.6 -O4 61.5
Alpha 21164A 400MHz 2MB	kappa	digital unix 4.0 Alphaserver 800 5/400 1cpu	69.3	69.2	-O5 72.5 -O4 72.5
PII 450MHz 0.5MB	wallace	linux 2.0.36 PC			clustalw 1.74 static 55.6 clustalx 1.64b static 58.4 clustalx 1.8pre libc6 64.3
PII 300MHz 0.5MB	scratchy	linux 2.0.32 PC 2cpu	89.8	84.8	-O3 -m486 -malign-loops=2 -malign-jumps=2 -malign-functions=2 then stripped 83.6 then -fomit-frame-pointer -ffast-math 82.2 then -funroll-loops 80.2 then -finline-functions 80.3	then 80.1, 80.3
R10000 195MHz 1MB	flicker	irix(64) 6.4 octane 1cpu	93.3	crash	6.2 -O -mips2 129.26.2 -O3 -mips2 95.76.2 -O3 -mips4 107.0
R10000 195MHz 1MB	indigo202	irix(64) 6.2 indigo2 1cpu	128.3	95.2
PPro 200MHz 0.5MB	gromit	linux 2.0.31-2 PC 2cpu	136.4	130.7	-O3 -m486 -malign-loops=2 -malign-jumps=2 -malign-functions=2 then stripped 131.3
PPro 200MHz 0.25MB	hobbes	linux 2.0.29 PC 1cpu	139.4	128.9
PPro 200MHz 0.25MB	loulou	linux 2.0.29 PC 1cpu	141.6	136.0	-O3 -m486 -malign-loops=2 -malign-jumps=2 -malign-functions=2 then stripped 136.0
PPro 200MHz 0.25MB	riri	linux 2.0.29 PC 1cpu			-O3 -m486 -malign-loops=2 -malign-jumps=2 -malign-functions=2 then stripped 139.3
PPro 200MHz 0.25MB	fifi	linux 2.0.29 PC 2cpu	144.2	136.3	-O3 -m486 -malign-loops=2 -malign-jumps=2 -malign-functions=2 122.0 then stripped 121.3
Alpha 21064A 268MHz 2MB	alpha1	digital unix 4.0 AlphaStation 250 4/266 1cpu	164.5	164.7	-O5 163.2
R4400 250MHz 4MB	booby	irix(64) 6.2 challenge dm 4cpu	232.1	180.1	cc -mips3 -O3197.2
R4400 250MHz 2MB	kiwi	irix 6.2 indigo2 1cpu	234.4	194.7
R5000 180MHz 0.5MB	brant	irix 6.3 O2 1cpu	273.5	207.2
R4400 200MHz 1MB	hobby	irix 5.3 Indy 1cpu	310.1	234.3	gcc -O3 337.5 cc -mips2 -O3 225.7
Alpha 21064 150MHz ?MB	nu	digital unix 4.0 DEC 3000 - M500 (EV 4) 1cpu	299.1	299.6	-O5 295.9
R8000 75MHz 4MB	phenix	irix(64) 6.2 challenge xl 16cpu	305.1	booby -mips4 271.3	[gcc -] [cc -O2 305.1][cc -32 -O3 296.9][cc -n32 -O3 -]
P 75MHz 0.?MB	gaston	linux 2.0.29 PC 1cpu	410.7	411.3

benchmark conditions

• alignment of the 55 sequences from swissprot/current/a/ac*
• clustalw/clustalx is a single process job and so will only use one processor on SMP machines
• clustalx timings also include a component for the GUI window management
• Disclaimer - these benchmarks in no way seek to endorse or discredit vendors systems or software involved.

Download ClustalW, ClustalX

• ClustalX
• ClustalW

• ClustalX
• ClustalW 1.74
• ClustalW 1.7
  

home (.de) | .de | .com | .uk | .de © 6pm35 30 Dec 1999 Johnny Weare